Basic Information | |
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Taxon OID | 3300009670 Open in IMG/M |
Scaffold ID | Ga0116183_1109807 Open in IMG/M |
Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1435 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA | |||||||
Coordinates | Lat. (o) | 42.35 | Long. (o) | -70.96 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F029451 | Metagenome / Metatranscriptome | 188 | N |
F054066 | Metagenome / Metatranscriptome | 140 | N |
F062734 | Metagenome / Metatranscriptome | 130 | N |
Protein ID | Family | RBS | Sequence |
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Ga0116183_11098071 | F029451 | GGAGG | MAIEFEDLIASTSSTAGKPSIIEALLSTVDAIFTNNRMLQRSRLSSRHIRGVVRVIGSQAFLRARLERSYKPFLDPDSGEFTYSRYDNRVLTAVCEGALSGRISLDGKSRDEIIRIFQAVGNTGQEQPVGRGGGVLGRFDY* |
Ga0116183_11098072 | F054066 | AGG | MFGMSRKPKELNRFRVGKGSPGLKAVMYRMVNKSYLDIRIYRGYREVTRIVTPDTGMRRFVVEGVGAFVMPNEEQMLRQLHDRYALYITYNINSSAPGEVTDELEPVAFVYPPLSPAEFQTELEAQTVADLLAETEKDMSWIWLLAGGAVLIFVLILLFGGA* |
Ga0116183_11098074 | F062734 | N/A | IVTGYPGTVLSTDAEPGRQYTAVVMDNQSVADATVTGEYYTYPLWVWMLFAALVACLLVSIWLPYAAFGAAIAGGFLLLLIAPNPDYAAYLRIFAGAAFIVGLAGLAGRLHS* |
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