Scaffold Ga0116183_1053381

Overview

Basic Information

• Taxon OID: 3300009670
• Scaffold ID: Ga0116183_1053381
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2400
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 42.35
  • Long. (^o): -70.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071725	Metagenome	122	N
F072892	Metagenome	121	N
F076577	Metagenome	118	N
F096294	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116183_10533811	F096294	N/A	PGKNEEVDDNYMIEFSGSVAQPISTKHYKFFTQEQYESELKEAYFAGWEDRNDCELREIIHKRKATKEDYFKWFMEELRKKRDNVQVIFEDDDGNQD*
Ga0116183_10533815	F072892	AGGAGG	MDINLLKTIVTRLFGLYSQFKSIVSDLEANNTLDNREWAQELLNHLSAELYYEANCLTDVICPPQEEEGDEKLFKIDGIIDAERNPMSEDEFCELFLKWAEENKLQFGGGLGTYREEEEDELLAGK*
Ga0116183_10533816	F076577	AGGAGG	MNFWPENKVISLMEIVFHFGAINYELNNGKKIREMWKEFKANAIDKKLKYINPDPRCTHPVNLDVIDYCWGYAEKIDKGEEIDMNELCEGCEFFKKEANNENPTQSN*
Ga0116183_10533817	F071725	AGGAGG	MKTLLNQTESEYLNLGSLDQELSWVLKIYSSGKINDLVYNGLLLYAHDEEIKAIRERWQKKEINEVGLFHELEKLSKVESLPG*