NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116183_1053381

Scaffold Ga0116183_1053381


Overview

Basic Information
Taxon OID3300009670 Open in IMG/M
Scaffold IDGa0116183_1053381 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2400
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)42.35Long. (o)-70.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071725Metagenome122N
F072892Metagenome121N
F076577Metagenome118N
F096294Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0116183_10533811F096294N/APGKNEEVDDNYMIEFSGSVAQPISTKHYKFFTQEQYESELKEAYFAGWEDRNDCELREIIHKRKATKEDYFKWFMEELRKKRDNVQVIFEDDDGNQD*
Ga0116183_10533815F072892AGGAGGMDINLLKTIVTRLFGLYSQFKSIVSDLEANNTLDNREWAQELLNHLSAELYYEANCLTDVICPPQEEEGDEKLFKIDGIIDAERNPMSEDEFCELFLKWAEENKLQFGGGLGTYREEEEDELLAGK*
Ga0116183_10533816F076577AGGAGGMNFWPENKVISLMEIVFHFGAINYELNNGKKIREMWKEFKANAIDKKLKYINPDPRCTHPVNLDVIDYCWGYAEKIDKGEEIDMNELCEGCEFFKKEANNENPTQSN*
Ga0116183_10533817F071725AGGAGGMKTLLNQTESEYLNLGSLDQELSWVLKIYSSGKINDLVYNGLLLYAHDEEIKAIRERWQKKEINEVGLFHELEKLSKVESLPG*

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