Scaffold Ga0116148_1044016

Overview

Basic Information

• Taxon OID: 3300009669
• Scaffold ID: Ga0116148_1044016
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2555
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080199	Metagenome / Metatranscriptome	115	N
F103498	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116148_10440162	F080199	GGAG	MKIVVQGVEETNLKLSQILAAVQENVDNTLDLFSSDMTKEIKDSAPYDTGRYMSSWFYERQAELKYAIISQNSYVPYNIYLVFGTEKFKPIANESKYKYSDPERGIIHDVRQIKFIYSIKLGQLIKRVNLLNANISLAGL*
Ga0116148_10440164	F103498	N/A	MKKMDSTESCELQHCRLRTDILCEVQRREEKQDERFYALIDELRLDWKETKKEVISIKDTMIQGFIALIVAVIGVYVSYLLLNVNGFL*