Scaffold Ga0116148_1003265

Overview

Basic Information

• Taxon OID: 3300009669
• Scaffold ID: Ga0116148_1003265
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15088
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061699	Metagenome	131	N
F098523	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116148_100326515	F061699	GGAGG	MAVSARKPRVFETAHDAVRSIRGKWQEWRAAGVGFSKFHKPGTAFALPFDPDDYLWAGPVMLKLDIPEGGDVFCRKGHYRRGVRKYLGQLKRGERVPPVVLLYHEAWDWTMQDGNHRMEALITHRAPNYEAFLGKPKRRKPIDEF*
Ga0116148_10032652	F098523	N/A	VDLDKLKDALQRAGIAFTERLVPHANPATITLVVQRVGYALSVTPTMYYHGPVVEIRPSGGPRINFHTNKDPSELVAVMDTLVQVRKWAARVQPKWATRQMALITGSNPGSPVLVYEPCCARLAIIPRPASFNQLHKHSPVKKYKIGASPKLIATDLVQLHQENTPKRSWESFVEDWNCQYSASFGHELALSASYIYAWNGMRFLMDGDDLSMDVWGPVFSVAFPEAIRLLESIQAVLGKTVKGRGNEEGPPREAVPV*