Scaffold Ga0116148_1002547

Overview

Basic Information

• Taxon OID: 3300009669
• Scaffold ID: Ga0116148_1002547
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17825
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (36.36%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038792	Metagenome	165	N
F049187	Metagenome / Metatranscriptome	147	N
F051331	Metagenome	144	N
F057853	Metagenome	135	N
F061478	Metagenome	131	N
F063031	Metagenome / Metatranscriptome	130	N
F094220	Metagenome	106	N
F103684	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116148_100254712	F057853	N/A	MSKLEQFILFHLFKAPALLLAAAAACAVATGALQHETRRIRGLVQSRAKLDLELIQYNSHFLSTNSSVESVLSAYQIPCRTLTNHPFQLELDYEAAKKLERVGLLVGAAEFQNGRLTVTLKDYPEAK*
Ga0116148_100254713	F038792	AGGA	MNTPSRKQFIELITHFKLATEATKEALASEYEQVTRQDAEGKRPITPLLDFCMQRAGTRERAEAIFNHVLKNSRISYWPNPEVAPHLRDNQEIKEVCSKHFIVPVKATEHLLVLCGCNPHDSEGPGAIWQKLAGKKPPFPVVALSEPERIRKALTHFA*
Ga0116148_100254717	F063031	N/A	MNPHHLKLPVIIDLQPEPENAILRLPDWMKYLFILLYICTLFGMGLLLKEGYGFFQLYQLKVQALRTAEQATRDIAALNQTLVENRRTQNSYEQFKYRQRTIARPGPLLDWLPTLVGRAQRAHFISLQQANDRVNVRVTLEKAIADSVIQNPAPPPDYQIVQSGEETPKYQELPTNQRPSPKNEYAAFAAQLKKP*
Ga0116148_100254718	F049187	N/A	MKSKALRAQLAAVAAIVFLALVAVAPWVAGSHVLKPVSVKWNQIIRHKDGLLAEKAGLEAKIKEFQNMEEKRKANELFQKNINQSGLDSMQGLINNGKYPIYSFRTLQLDSKETSFSFVAQYNTLGQLLTDLWNTFQFIELSSLVVKPSPNKPEEDVVATLTVRLPQAQNR*
Ga0116148_10025475	F094220	N/A	MNTSEAIRRLAGIVPEHNLKEVQALPSFNTWGVDSRPGQLPSILYIGEGSRDFGAPCWPFMAAHEAMHSIATFYLQTDDYRFVLYNICEDWRVNQCLLGMFYEKLNKSFKETRQTILRRWEKEPLKLKSPVSQVLQHLCYLNHLSGKEATLPVSEAYLKEVLGIREQFGSAENWPLVPPDPNGSVRRDENARISGRLTKLILQHRVPPNVSPAELRAIMVRTGYDLQFSSTIGLPPRAGGCAHRRPSTPESGNPD*
Ga0116148_10025476	F103684	N/A	MKKRVKILLLALGGLAIALCLLLWLMPAPRSLTQQQLKAEYTRAAQRLYRHEILSLYKPPEEAFTPHGLQLLRRIQELYSPMFLPYLVMGSVPVQPDVLYNPWFDLFILVEDADGAINSVGLASSLAAGQSPQLQVQERFWQELYRRYPVAQMATFSRPKAFENTGRVMLEMRNLTNRFGWPGRVQLSGARVSFELYLQRPAQAIYCSPTEPGTYVVFNYYNDRLHTNVMALAPYHIRQVEKLIEETAKKGPRPSVPILK*
Ga0116148_10025478	F061478	AGG	MQAATIEINYDGTPMEVFQQIRVGRLRLYNAAARDRLGVVQETWKRGALGKTFLVRPIAGQIVGEEVVDNAGRVIAVFGLAITNAFLPDPRPQREYREKLQTLLKEL*
Ga0116148_10025479	F051331	N/A	MKNLICLAMLLLAPLSHAGTVKMWDGKTRGMDLVTVGHKRVTVFLADGRTTVLGIPILVEKPKAAVPVTGNPPATPKR*