Scaffold Ga0116148_1001186

Overview

Basic Information

• Taxon OID: 3300009669
• Scaffold ID: Ga0116148_1001186
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29103
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (41.38%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037183	Metagenome	168	N
F037652	Metagenome / Metatranscriptome	167	N
F045301	Metagenome	153	N
F050262	Metagenome / Metatranscriptome	145	N
F058930	Metagenome / Metatranscriptome	134	N
F064316	Metagenome	128	N
F080330	Metagenome	115	N
F088757	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116148_100118611	F045301	AGGAG	VKIIPYNRKINAPLRFLYYLEVFDLFVITVLGFLAPLGASTFLPVDIPTWHMLLWLVGLTFTLIIIKIGRAPGFIQHRLAQLLRPKSYHPGKRRLPHFLLNPAVYRGEVEAARHPEQPFTPAELQQIQNNSRRLRQARREADLLA*
Ga0116148_100118613	F088757	N/A	MSPKQAVKGVTLNLPWILAVLTGTRARDWKLRDGPDSSCGVDYYYGHRQGNEAYINVDQGHFTVSVAGETLFTGDPAQHPRLKRCVSEG*
Ga0116148_100118614	F058930	N/A	MPKLLIGLCALILLASPHLALAQTQGGLTVDNFNDAANESSGLTSTFYTVTHYALYIFYCLGIIFMGIAAVKFKGGDMEAMGKNLGGSVMLFLVPKVVETLITWAAK*
Ga0116148_100118621	F037183	N/A	MAETLSFTLELSKELVARVKAVKPSWLAELTDEEYLSHVIARGNFDAYLQQLENANAAVKKLAADLNLSKRGGPAQSKNNKAGQRPGNKAGPNQPGEKPATAPVT*
Ga0116148_100118624	F080330	GGA	VKKPAPFILSLLAAGTVLAGDPFSGPDANQSGLADGVRLSARVVENVYLMPEQITKLIFPKAVEEVSVNTQVINIGRNPPDSKEYYLLLSPKVAQGDVDMHVVLEGKTYTFRLIVGRDKVNYRKTYTAEGGGSGRSLRKVPPLAPTEINTTRLIHIINQSMRDPNYASVVAKDIGSSPQGATYLWNGAEVVLQSAWHYYPQDVVILQVEVHNPTSRAVYLSATQLEPFIANTTFHYLLTQQGTKVLLPGQTDIKYIFLQGCGIDIEGARFELRLPATGTQLNAQPQQNP*
Ga0116148_100118625	F037652	N/A	MDPIPYTHFWSEEPETQRRAWRPTDEVRRRLMRLWIIQALLLGAIVLVAGVLTRESKRVPPIYAKLPNGVIFETTTGNLQMDRLARTELVNNVLQILYYQEGSFNYLETVRQNVKPQLLGRFGAEMQNASKQTNSTVYLNVVETFEALNVPAKGFDAVTKGVLSKRSNQESASAPIYIRTRWLLAGDRYLLSRVEEIRPGDYYELFLAEKERLKKLSKPELERELGVRKNQEIPLPNRNHLF*
Ga0116148_100118626	F064316	N/A	MLGNAQEEASLEVADPKAVKPARKVGALKMLLRQFEATGNPPLQGEEVLPTKLVGDGNYHWYPLAWLRWLAQWERLKTLVLVIILLALLAVYGLIRQRRSCQVTLPEPSTEMLLKAKGFDAFNQNQAEAFILFVANAANQASSEGMPNLNLLEGSIDSAIYLRLQQKGMSQQLKNVLPSEFPIYTLYISEVTRWRYNPATRIVSACVKGFRMSHTFSGKSGMEPYRAQMEIFWEPMSNRNKWGYYVQRLDEFYGAAAEAYDAELKTRDRTGA*
Ga0116148_100118629	F050262	N/A	LGLVVTGVAQFLLVSKINVYTDNVKTGVLQALSDTIVKCQTMSVGETNVPVGDDLLPHVPSGTMRLEKSGPANGVYTLQGSVTWRAFPHGDDSFLFHEQLTLEVPE*