Scaffold Ga0116148

Basic Information
Taxon OID	3300009669 Open in IMG/M
Scaffold ID	Ga0116148_1000593 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009669 Open in IMG/M

Scaffold ID

Ga0116148_1000593 Open in IMG/M

Source Dataset Name

Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	44421
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (41.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

44421

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (41.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Ecosystem

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	41.53	Long. (^o)	-90.43	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA

Coordinates

Lat. (^o)

41.53

Long. (^o)

-90.43

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056466	Metagenome	137	N
F075595	Metagenome	118	N
F076001	Metagenome	118	N
F082059	Metagenome	113	N
F102942	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116148_100059312	F076001	GGA	VSSLWAQAALIRKQKHNTKMNNRYKNAIAGRVNPDIRNKVQPLIEKFAQENQLPFNTVFGAAMFAAERLKGRVTCARVEALVTAATVQAYELEMQRRTTARKVQITGIIRRALPVAKRTTEVIEKLYSQFCGFQGSIPALMQQVQAAASAV*
Ga0116148_100059325	F075595	N/A	MAEKLPQSLRQRLVPLFKEILAYHWVEELTFNRLSGAAYQVLLSEENSRLTEDQAVDLAVNLTRRERLPELLARYDALVQKREQQAQKQVLGIVNNMMPEDTPNRAHVVQGTLDMLHKFPLVRSITGIRTLVQARIDNHHQDVDEDEYLALA*
Ga0116148_100059328	F056466	GGA	VKRYYLILSRLSLAIIILQALIFLHSGLNVQKFNRRIDQMVLDLSQKPPSDPALQPLYREAGARLAQLQQHNREHQWLLKAILLGGLLHVGVCYSLYIHFLRMGFTWTKIFLHANNLFISLLLPSPAGLAWMLAYIIGTRVYKHCCVASTFSKPCTET*
Ga0116148_100059330	F082059	N/A	MKIGRSRQVMVVQMPLVDLGCLCLLPDFRQLMARFPRHIKVNMFFPPYRLALNRQVVPFVLATGNGAPILEKLRRSLRASLGQHPLGPIK*
Ga0116148_100059334	F102942	N/A	MKERMWLNKSTMKTRMFFAVTLGVQLLLGATSSYGQTSNRPTAVLKRDTNVSNVGTSRSQEAANKGADTDRDYLVQIRNQAVQCAANTVVATNDAPTEVGNLEWTGQYAERFLRIPEGNSGKPKLVRFLIPVYREKSTKPEASVGTEDKREQDRRVTEISSTKSG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116148_1000593

Overview

Ecosystem & Geography

Associated Families

Sequences