Scaffold Ga0116148

Basic Information
Taxon OID	3300009669 Open in IMG/M
Scaffold ID	Ga0116148_1000574 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009669 Open in IMG/M

Scaffold ID

Ga0116148_1000574 Open in IMG/M

Source Dataset Name

Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45341
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (46.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

45341

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (46.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Ecosystem

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	41.53	Long. (^o)	-90.43	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA

Coordinates

Lat. (^o)

41.53

Long. (^o)

-90.43

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F044275	Metagenome	154	Y
F046149	Metagenome	151	Y
F061699	Metagenome	131	N
F076810	Metagenome	117	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0116148_100057412	F046149	N/A	MSKQVLLNQAVLEFRGSSDLPCGITQALERKLRRADWTELLKPLLQGIPAKIRIVDVSGPERAGREPAKAGRSPRKRTFCVGITRIGYGSKTFEVSDVTAEEAARSALEQAGNHDFTEMNSEYEVLSVREKS*
Ga0116148_100057425	F044275	N/A	MADRFPIRYEIGGKIASAVFDALLEHLLAVQMTREYGGCDDEASLRKEAEQISGNSSLKVCNSELAPYLTDELDLFLVEHRLAFVKRTDARHEYGGQIEWWRPGMKHLAKWEFTNTEATEVHVSLEFLRKALGQRKTLRKVVEGLEGVAPDPGPLILLSRTPKKVCKCRRVPLANRRVTADRQGTTA*
Ga0116148_100057428	F076810	N/A	MISARTPLTITLQRQGISASLRTQARMLMTPGPGNSNPGFSLLIQAVPSGTAWFLDLAVDGRHERIFANGCGQEPDWRRNRGAPQPFTDLELAKRTAEEELGRRLNRPVCISPQVELYCPCDAQVYDYLKSDVEFTRARYDAPTDSICSVPEDCRLVSWPKGDLQRPRFHIPKDGAHIPADCRWQTICPKAHEEFLKAHNQRSGPEKAKRWLAWLISEYRKYGLNS*
Ga0116148_100057443	F061699	N/A	VSAKKPRVFETAHDAARSLRGKWQEWREAGVWFSRFHKPGTAFALPFDPGDYLWAGPVTLKLDLPKAGQTFCRKGHYRRGVRKYLSQLRRGERLPPVLLLYHEAWGWTLQDGNHRAEALAVHRAPTYEAFLGKPKRRKSIDEF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116148_1000574

Overview

Ecosystem & Geography

Associated Families

Sequences