Scaffold Ga0116148_1000198

Overview

Basic Information

• Taxon OID: 3300009669
• Scaffold ID: Ga0116148_1000198
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77323
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (56.92%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050854	Metagenome	144	N
F069182	Metagenome	124	N
F069964	Metagenome	123	N
F076776	Metagenome	117	N
F098524	Metagenome	103	N
F099028	Metagenome	103	N
F104337	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116148_100019829	F104337	GAG	MSLEWEKRPEVFDSFSPIGGRLIRRAAVNWRRIQAIDHGLLPDLRSAWTGCKSGLGYATYEDVARALPLRGRLHARVQQVAENLKHFWKQNPAGILMTVDRAGNNIAFKFKTT*
Ga0116148_100019836	F099028	GGCGG	MNAFDMFTVSEVSLRLGPTAIHRRPGVVSRVTPVLLAQPYRGFAAGTLLGRVQTRTQGKLPLASATFSESSGAVLGHDYPWLVRMFKEGPCGERQARLDRIRPQKQYRVTRMFGFLAHDPCVYEQGDELTVKQAGDSIATLVSKKGTKSYSVSWPRAAFESCVDTFALRELS*
Ga0116148_100019839	F069182	N/A	MPTIHAQHIEAARQEFFVRVRRAPCFNVLFKPARWETWRVLGETAEGALRIAKYHFYRSDQIELAEAGAATAAELE*
Ga0116148_100019857	F098524	N/A	MDTGDDDEKQFEKTLLEAGKPDAGATIEASVKESPSRSATALEDGSTEEESDAEEPGVDPIQTLSNRRYPRLALHRDTLRLLQRVEWMHRNQGVNDFCNDAIRYVILAREAGTTSFNDLQAVSAAIDARLDELSVILLRLHQAAGDLSIIVEHQKLIGAYGERLRKAATTGA*
Ga0116148_100019858	F050854	N/A	MDDLLTLAIGKLADHYQVSEDYLRRALLLRAVAELNAVTDRSKPATPEQLEVILTNLNRQLNEVLEGFRRQIVEADNAVQSAHIAIAVVERVAGVLRGQMAGPHLPSAGSR*
Ga0116148_100019862	F076776	GAGG	MEFNALYGQLLSRLEEVEAPSLEQAKALLRNPETLLAQREQKKAAAVKAQAQLKAQIVNANIPKQAPDREKLVADTLAFVNRFPTLNAAEIKRVTILRQTNGNRDLRAVPFSAIASPESLAENLDCAQKLDDGNGKAGVHFSTSCQMFFLQQTELLPSEKSPAAFPSLVEIS*
Ga0116148_100019863	F069964	N/A	VSETTAQVKVMDIRQLREEKPKLGWLAEVRFNIFHNHRKLEELEPPVSAHLNANGPVKVVTRANLFEFTPDGDRVNLVIREGRKLDGLPYQTAPEAVQLFCNEAITLHKNQHLFWHLTEDEVRQVATEFQDLASPGGIHVKKGRHALLLQIKDGRLDLSVCDNC*