Scaffold Ga0116148_1000020

Overview

Basic Information

• Taxon OID: 3300009669
• Scaffold ID: Ga0116148_1000020
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 167863
• Total Scaffold Genes: 142
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (37.32%)
• Novel Protein Genes: 29
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (44.83%)
• Associated Families: 29

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035367	Metagenome	172	Y
F037183	Metagenome	168	N
F037652	Metagenome / Metatranscriptome	167	N
F038201	Metagenome / Metatranscriptome	166	N
F038792	Metagenome	165	N
F045053	Metagenome / Metatranscriptome	153	N
F045301	Metagenome	153	N
F045645	Metagenome	152	N
F046997	Metagenome	150	N
F049187	Metagenome / Metatranscriptome	147	N
F050262	Metagenome / Metatranscriptome	145	N
F051331	Metagenome	144	N
F051827	Metagenome	143	N
F052500	Metagenome	142	N
F056466	Metagenome	137	N
F057304	Metagenome	136	N
F058854	Metagenome	134	N
F058930	Metagenome / Metatranscriptome	134	N
F063031	Metagenome / Metatranscriptome	130	N
F063287	Metagenome	129	N
F063304	Metagenome	129	N
F064316	Metagenome	128	N
F075595	Metagenome	118	N
F080330	Metagenome	115	N
F082057	Metagenome	113	N
F082059	Metagenome	113	N
F094220	Metagenome	106	N
F102386	Metagenome	101	N
F103684	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116148_1000020101	F058930	GAGG	MEEDRPCSIEGRNTKQRMHEINMKTLAPKLLIGLFAFLLLVTPHLALAQTSGGLTVDNFNDAANESSGLTSTLYTVTHYALYIFYLLGIIFMGIAALKFKSGDMEAMGKNLGGSVMLFLVPKIVEVIITWAAK*
Ga0116148_1000020102	F057304	N/A	MREVLVAVMNWLARPFPSSNAVVLSIFASLLFLAGVAVAWHPAVTEIFDVLQAPKLRIVLRIFAFLFFSCYCTTGALCRVLIQFFPEKFGQDQGHI*
Ga0116148_1000020108	F037183	N/A	MPETVSITLELPKELISRVKAVKPTWLADLTDEEYLSHVVARGNFDDYLQQLESANTAVKKLAADLNLGKKSSPTESKRAKAGQRLGNKAGPSQFGEKTATVPIT*
Ga0116148_1000020111	F080330	AGG	VKRFVHFVLLLLAAGSALAQDPFQGNDAGQAGLADNVRLSTRIVENVYLMPAQITKLIFPKPVEEVSVNTQVINIGRNPPDSKEYYLLLSPKVAKADVDMHVAMDGKSYTFRLLVGREKVNYRKTYTAEGGGSSGRNLRKVPPLAPTEINTTRLIHVINQCMRDPNYASVVAKDVGSSPQGATYLWDGVEVVLQSAWHYYPQDVVILQVEVHNPTSRALYLSATQIEPYIANTTFHYLLTQQGTKVLLPGQTDIKYIFLQGYGIDIEGARFELRLPATGKQLNAQPRQDQ*
Ga0116148_1000020112	F037652	GGA	MERIPYTNFWSEAPEGQRRAWRPTDEVRRRLMRLWTIQALLLTAIVAVGALLAKESKRMPPIFAKLPNGMVFETAIGRLQMDRLARTELVNDVLPLLYYQEGSFNYLGAIRQNVKPQLLGRFQAEMQNASKQTNSTVCLNVVETFEVLNAPAKGFDAVTKGVLSKRSSKDSASAPIYIRTRWLLSADRYLLSRVEEIRPGDYYELFLAEKQRLKKLSKQELEREMGVRKNQEIPLPKRNNLY*
Ga0116148_1000020113	F064316	GAG	MLGNSTEEARLEVADPKAVKPAKKVGALKLLLRQFEATGNPPLQGEEVLPLKLVGDGNYHWYPLAWLRWLAQWERVKTGILLLILLCLVAVYAVISHRRSCQVTLPEPSSELLLKAKGFDTFNQNQAEAFVIFVLNAANQSSSEGMPNLSLLDGSIDAAIYLRLQQKGMNQQLKNITPAEFPIYTLYISEVTRWRYNPATRIVSAYARGFRISHTLSGKSGMEPYRAQVEIFWEPTSNRNKWGYYVQRLDEFYGTAAQAYDTELKDLDRTGI*
Ga0116148_1000020116	F050262	GAG	MKITFHRRRRTTGATLVEMVAAIIILGLVVTGVAQFLLVSKINVYTDNVKAGVVQALSDTIVKYQAMGVGETNVPVCEDLLPHIPSGTIRLEKAGPANGVYTVQGSVTWRAFPYGDESFLFHEQLSLEVPE*
Ga0116148_1000020119	F058854	GGA	MRLCVLCLFTSALNSEAELIDHFNARWQGCAWQANRLELPGLAWQSALFPLITQGPGAFSLPSGAFVLRLCVLPLNPEDSEPILVFWGRIADLKDKPLARLFLRKRRLVWVCPIDPKGDSLFDAPRDVELETRELTPGLWATVDVLVNPLPYQQTFGWNLEMNHPQDPSKSSGTPLHLARQLTAADWSLLKIEVPRQHSTWLGQVELLAAGTPPAQLRPNILRR*
Ga0116148_100002012	F075595	N/A	MFMAEKLPQSLRHRLVPLFKEILAYHWVEDLTFNRLSGAVYQVLLSQEHSSLTEDEAVDLAVNLTRKERLPELLARYDAVVQKRAQQAQKQVLGIVNNMLSVDTPNREQVRQDTLVMLRKFPLVRSITGIRKLVQARIDNHHQDVDEDEFLVLT*
Ga0116148_1000020120	F046997	N/A	LSLIGCSLTLSAVAAAGPLTAADVRTEQDAIPRYLAQEKAEAIEMFGASQQALLRDRAMSGISRIENKLQSGPTNVVVEPNAPLLPLGEKKLVLHADVLKKSYTAYRPSNGKPLYVNTKGLRAPETYVAPEFLRTGVNILIPKGTVRVPVCLGGDELEDYLQLRCDRKLQTGDYWKELHARKLDDEQLARLRYYDYLDTHAALRSVPVYQCTELRSRTH*
Ga0116148_1000020122	F035367	N/A	MWSMVATVGMPGSPRNLSAESGGPDLKWDDMPAAVRWIFVLALDAVVCGFFGLGIALLHFLWLEYAAVRWPRIRYTEDYQASFALVCATVVFVLTALRQIKTQLECKSPRAGEMCLILVFALIAMVGMTPVPGSNFPKYLYDMNRSTKPEEGQGSVGKDEGVNPFKLKRDAP*
Ga0116148_1000020123	F063304	AGG	MEDMKLSNPAINGNSSPHVYNLLDQRLAQQGTPLHQIIRTYAAAVPAPPTSPEELLDQVTAVLGKWTADPAQCVKPETPLAEAHLQLMDEISKIQGPEGAARLEATLVRVVANQFARTMGSELRIPDESKLICLSDVKPANAYSAFAQRTALIGIQPHEWVRRWVESQRELFRAKAPTDAGYLRLAQRLSGPWPAEPGKGDPFQKTLATFLDGIASSTSHSHAVVVQSSLLDTFARAIRRDVRDLGLDRPTAPSPAMSMG*
Ga0116148_1000020125	F045645	GGA	VKLQEATLKALKSVTGVYAVRPIIRNKALILRPGRDGHELAQDEGEAMRVVAVSDLKPSLLSFAAINGIRVKNYTDMAAPKPRMPSAPKSAQAPDLVM*
Ga0116148_1000020126	F038201	N/A	MAVNPAQADVFTRNVEFMVAQVAGNHAARTFRMLQTTFPGLRNFQQLRAFATLYVANGLRPLRFRPLPSDIDPVRLKGELSLRFYKGMVVLAPDERIVWRGADAYGPFDAARASRFSRQLSAESPTNDEKGHVLDPETCAPVPVGQFPFELS*
Ga0116148_1000020128	F051827	GAGG	VKSQIYLVQNYGGVSLEVVGGPFDPKAIEQIEGAIIQLVKEDSGLGRGGDDSLHTLEIGSDGKPEFGGFSGGYLENIRWVAAGCPPSEKPDTWDHPEFALAALETAREPQPVTIPEEQE*
Ga0116148_1000020133	F045053	N/A	MITVASYSVPGFGEISVVRQNDAGNPCCDLFAPSGEWLNEGHPFRCKPRRAQVEAFLAQRLKEALARVSRECRRLHIQQEDLDELVHEAAQADNPRLNEAPGERQQERLITKAEERACRINNRGRADQLIYLLEIYGETGVLAALREV*
Ga0116148_1000020134	F052500	N/A	MTSRAQREEASGIANEIARLQGVQSAVVDDDNGYGSFDLFVKLRNRLEEQYASRRIEFVIPLHGLMARIASIAERHGARLEWHEPPRRQYSRPGHGKKLFDGYDTDSYKLSIYVPQPARENQSPAETQLGLRITQVSETSSGASGALWLCHVRTECR*
Ga0116148_100002015	F056466	N/A	MLSRLSLGVILLQAFIFLHSGLNVQKFNRRIDGIVSDLSRKTGSNAALEGLCREAGAQLAQIQQQNREHGWLLKAILLGGVLHVGVCYSLYIHFLRMGYSWTKVCLHTNNLFLALLLPSPAGLAWMLIYLVGTRIYKHRCIVLAFSQPCAET*
Ga0116148_100002017	F082059	N/A	MMRIIQSGRALVVQMPLIDLGCLCLLPDFRQLLARFPRHIKVNMVLAPYCLALKWQVVPFVLATKNQAPTLEKLRRSLRASLGQPPLKVQR*
Ga0116148_100002028	F102386	N/A	MKRMKPILIMVALALANCGWGQDTNLTANAAALPVAVAAPNTTTATETFKPLARLNELPPASVVPAAGEQFKPLPRLDGQPMTARGNPAQMARQGAQVKKMLDLYKTPEGRVKIAELMTVIQLANQQPEVRAKVDEARKLVHDYIRRVAPELLPTLETMNANRETVRQNKQATDMVY*
Ga0116148_100002053	F063287	N/A	VIRALPQQRNRVIVSSASRNQQFTGVNWNGTSTRPIFVLVRTQSGERPLNAEGYDLLGHEGRHAAYGNKKLFRHAMDSGIDHANELLFPGLVPTMAAGLLAIWLVRKSGEQLTFKDTIKIKELILAQPEVLNGWCEVENDLFNPENKSYRIFAEPDPAALKRIVKAATQS*
Ga0116148_100002065	F049187	AGAAG	MKSNALRAQLAAVAAILFLALVAVAPWVAGSHVLKPVSLRWHQVIKRKDGLLAEKAGLEAKLKEFQNMEEKRKANDLFQKNIDQSGLDSIQGLINNGKYPIYSFRTLQLDSKETSFSFVTQYNTLGQLLTDLWNTFQFVELSSLVMKPSPNKPEEDVVATLTVRLPQAQTR*
Ga0116148_100002066	F063031	N/A	MTSHQLKLPVIIDLQPEPEDAVLKLPGWMKYLFILLYICTLFGMGLLLKEGYGFLKLYQLKVQALRTAEQATRDIAALNQKLLENRRTQNSYEQFKYRQRTIVRPGPLLDWLPTLVGRAQRAHFITVQPAADKVNLRLTLEKAIADSVIQNPTPPPDYQLVQSGEETPKYQELPANQRPSPKNEYAAFAAQLKKQ*
Ga0116148_100002070	F038792	N/A	MNTPSRKQFLELTVQFTLATEATKEALAAEYDRVVLQDAQARRPITSMLEFCMHRAGTPERAHAIFNHVLKNSRLSYWPNPELAAHLREDREIRDACARHFIVPVKASAHLLVMCGCNPHDSEGPGAVWQTLAGSKPPFPVVALSEPDRIRQALMQFAWPV*
Ga0116148_100002072	F051331	N/A	MKTLICLALLFASVLSHAEAVKLWDGKGRGMDLVTVGHKRVTVFLADGRTTVLGIPILVEKPKAAAPTAARKPATRKP*
Ga0116148_100002073	F103684	N/A	MKRTRKILLLALGGLAVTLVLVLWFTPAPKPVVTRQQLKAAYIRAAQRLYRHEILSLYNPPEEAFTPHGLQLLRRIQELYSPVFLPYLVAGSVPVQQDVLYNPWFDLFILIEDSDEEINSIVLASSLAAGQTPQLQVRERFWQEFYRRYPVAQMAAFSNPKPFADTGRVILEMRNLTNRFAWPARMQVGQTRASFDLYIQRPAQAIYCTPTEPGTYVVLNFHQGCLHTNVMALPPYHVKEVHRFLVETIQNGPGQPAPNPH*
Ga0116148_100002074	F094220	GGA	MNTGEAILRLAGIIPEHNLKEVQALASFNTWGVDSRPGRLPSILYIGEGSRDFGPPCWPFMAAHEAMHSIATFHLHTDDYHFLLYNICEDWRVNECLLGVFYEKLAKSFRETRLAILRRWEKDPLKLKSPVSQVLQHLCYLNHLSEKGPRLNASNDYLKEVLRIREEFGSAENWPLVPPNPDRFEREQENERIGKRLARIILGHRLPPRICPAELRVLMVRAGYDLSFRRGLTAPRGPENASDGPSRNPATQIEE*
Ga0116148_100002080	F082057	AGCAG	MEALFHPGACWLVIVDNRCTVLRIQPGGDRCQFPGENGEHSLGRIQEWLSPVWTATMLKCVQCLKRIAQQLKPGAKLDICDQCRNTVGSPRPMSYWLGYLDDQPEIVRVVEDGIHRLGEAQTYPLAHVREWLMPIWGPDMVYCPGCCQAKPRKDIVFLFHRSPKGVCKDCSEHFEFEHPEVSVRA*
Ga0116148_100002085	F045301	AGG	VRTIPYNRKINAPLRFLYYLEVFDLFVITVLGFLVPLGVSTFLPVDLPTWHMLLWLVGLAFTLIIVKIGRAPGFIQHWVTQLLRPKFYHPGKRPLPHFLLYREVYQGEVEAAAHPDMPFAADELAQIQSNVRRLRQARREADLLA*