NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116180_1055226

Scaffold Ga0116180_1055226


Overview

Basic Information
Taxon OID3300009668 Open in IMG/M
Scaffold IDGa0116180_1055226 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC073_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1880
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)37.8Long. (o)-122.27Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029085Metagenome / Metatranscriptome189N
F047639Metagenome / Metatranscriptome149Y
F075995Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0116180_10552262F075995AGGAGMRSRYKPLRKANVFITTKKDFKRVFYGMRTLYAKDCTGKKYIRYKNRYYPVFYDGYHTYIARV*
Ga0116180_10552263F029085AGGAGMKKVKEDKLKIDELLKENISEQLENGSSDLVSLIAISELTNLDKLKVITRLKEEQVPILTKLYMYAETFNIPFIKNMADNILQLQISIRGLGRKELVNIVRESTPTEVKRGLFGTKEVLDKIERSVDNEK*
Ga0116180_10552264F047639AGGAGGMRFFNKHKYLRVIKFNSDKSSSITYHLYSKFKPNFLINPDHIFYYNGYRTVIITDKSAETINPLDFESKFNASDFQTAIESKLLRDTFSTLKHNIFDTPTILLIINLVITLAVLYFLLKSQGVI*

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