Scaffold Ga0116182_1257427

Overview

Basic Information

• Taxon OID: 3300009666
• Scaffold ID: Ga0116182_1257427
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 739
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA, Massachusetts, Boston
• Coordinates
  • Lat. (^o): 42.35
  • Long. (^o): -70.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053314	Metagenome / Metatranscriptome	141	N
F067884	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116182_12574271	F053314	GGA	MVRSSVIVRDNVIVTVFENGRAINRFTAHNTWGTAGLNSIRDWFAGIGGTPVTHIAWADASGNEWARDLVTQRVYTTDKTLLIRQYLSSASTANGHTITTVRAYNAQSGGTMFAEAVFDAVGVAKTANNQITVEWTHTFADGGS*
Ga0116182_12574272	F067884	N/A	RDIQGTINRYQVTAVSGDALGGWLDWFTALARQAQKFVLYDEDQVLILKVVADSVQVSDQAVEFDWGTVDRKPESRCGGLHDPKPAAQVDFSETDWVH*