Scaffold Ga0116182_1002050

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0116182_1002050

Scaffold Ga0116182_1002050

Overview

Basic Information
Taxon OID	3300009666 Open in IMG/M
Scaffold ID	Ga0116182_1002050 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	20250
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (13.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA, Massachusetts, Boston
Coordinates	Lat. (^o)	42.35	Long. (^o)	-70.96	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026554	Metagenome / Metatranscriptome	197	Y
F030433	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116182_100205017	F026554	N/A	MKLEINEVYHQYIVRVVIFALFTFKRQIRHPNVYKQSVYSFVEKRLPWKINLLIDTGEKLSKEDERDLILEELLNDKKVDFLKYVCVIFTTPLKQDCMMEIDLTDEKKYEHFLYS*
Ga0116182_10020509	F030433	N/A	MSLFTKAKQAAPKKVSAGKDEKVRIKIEDPTFFSKVEKLEQLLDNQKRDKAKSDMLHDELKDLAKDEWVKLYEKNGKNPESVMLEYVKEDTDDTAQLMVIPTDKYISITPARAEELQDLYGETIVEEKTVFSFDNAMIEKYGEIISRMIEDSTDIAEKDKEKIIKATTSFSVAKGTIDNFSKLGNVQELMEATKPVVMLKNIGVIKG*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.