Scaffold Ga0116135_1001730

Overview

Basic Information

• Taxon OID: 3300009665
• Scaffold ID: Ga0116135_1001730
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10591
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001287	Metagenome / Metatranscriptome	731	Y
F002461	Metagenome / Metatranscriptome	557	Y
F004328	Metagenome / Metatranscriptome	443	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116135_10017302	F001287	AGGAG	MRLMHLCYVAVGFAVARWIFRRQPVADPVNRLRTSGLL*
Ga0116135_10017303	F002461	GAG	LTALLPNFLSTPKAIRLLSTLLASGILFLFLSSRAKAQDDANDAPLGDVARSLRTKKAAPAEVVIDNDNFSEVVEEAEKKKEAGSTMVFSLEPGGKDFQVSSPDVSCSFSFSAKVTSLLSDPASLNELPRSELAKLDGPATIDGDSLQVSVHNGSSWDLREVVIGLTILRHSDSSASAYGPAHIVPAATGASHPEIDSSQKQPDTTVLLRVKGSAPPAATAIFRTQLNFALFPDQEWHWAIVKAKGIAPQNVPASTTAVPGEQVPQPNPSQVRLNAAN*
Ga0116135_10017307	F004328	GAG	MPDNVPNSPQTPAIPTAATPTPQRGPTIRIGDEFGTAKRNLPPVKILLFTLGGVLIVAGIVSFLQRAKPQGSGSIDNIAAVQIPGQEATLVSLTFTLRNSGEKPLWVHNIEGKLVTASGENTADAVSAIDFDRYYQAFPSLKENAQAPLVPEDKLPPGQKIKRTVIVSFPVNLDAFNQRRSVSVIVQPYDQPLPVTLTK*