Scaffold Ga0116181_1089988

Overview

Basic Information

• Taxon OID: 3300009663
• Scaffold ID: Ga0116181_1089988
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC075_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1257
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 37.8
  • Long. (^o): -122.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055725	Metagenome / Metatranscriptome	138	Y
F058997	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116181_10899881	F055725	GGAG	MANFNGCGIDLKTITELAAEGLSLNSMSKLTGHSKNGIKAALERNNIPYTMGVKERCITVDGVMMSLGDACNAKGFSRQSMYAWRVKRGLNEQEGFNAYIVYQQSKRTIDKPILTFKNATVLYKKERYTLDAISDKLRLNKQRFKVYMRNNRYCQNAFERYCWMRGL*
Ga0116181_10899882	F058997	GAGG	MIIYKGQQMTVREACALMGIDCDDFMAWCKKFALQNYGYALNYYKRTLKFKKG*