Scaffold Ga0105858_1001538

Overview

Basic Information

• Taxon OID: 3300009661
• Scaffold ID: Ga0105858_1001538
• Source Dataset Name: Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7778
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location

• Location Name: Arctic
• Coordinates
  • Lat. (^o): 68.6137
  • Long. (^o): -149.3144
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010345	Metagenome / Metatranscriptome	305	Y
F066047	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105858_10015381	F010345	GGAGG	MGILARFWSYSIDTYGGAPLLLLINLIQLALLGWVLGAGFRARAMNGLSTDARRIAAAHRAEIWQKQVRPLALTFMLLGPGLGLGMSTLLGALGMGQLGDAMGTQTSADTLAALMAHAYREISYAYFLMVGGTFPMLLGRLIVLAARKLDEDGQDARGGEPDELLL
Ga0105858_10015384	F066047	GGAGG	VSSRTSSGFEEIESLIYRLFAEKQFALALLALVMVAQLLSAQFLLLRLSPPKSQAAAAPTRDQRLDVACGSGAPRTLTGEAMSAPAARGKVVVVHLPPMQEACLAQVTSASPSELVVGMSDAPSSP*