Scaffold Ga0123328_1054109

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0123328_1054109

Scaffold Ga0123328_1054109

Overview

Basic Information
Taxon OID	3300009659 Open in IMG/M
Scaffold ID	Ga0123328_1054109 Open in IMG/M
Source Dataset Name	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C12 SIP DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1861
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location Name	Washington, USA
Coordinates	Lat. (^o)	47.6525	Long. (^o)	-122.3049	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042860	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123328_10541092	F042860	GGGGG	MLTREEILKRIEIEDVRIASADRNIEGLILQKNKSLDEQARLFALLEAIPPEPEQPEQPLE*

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