Scaffold Ga0116188_1156390

Overview

Basic Information

• Taxon OID: 3300009658
• Scaffold ID: Ga0116188_1156390
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR2_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 847
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → unclassified Corynebacteriales → Corynebacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 34.65
  • Long. (^o): 135.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038694	Metagenome / Metatranscriptome	165	Y
F049656	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116188_11563901	F049656	GGGGG	MTGIIDRYEILDEPDGRGYVTVKRLADGKTATCKASWLKPAPHSESPAHVMPRSR
Ga0116188_11563903	F038694	N/A	RGLFKQENLKMSNDETVTGIILARLERIESKLDSIQAQGCSKAEKHERMHDDVVELFSRIREVERVQAEGRGKLVVIVAILTTAAGLLFEWIGRRLS*