Scaffold Ga0116188_1070819

Overview

Basic Information

• Taxon OID: 3300009658
• Scaffold ID: Ga0116188_1070819
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR2_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1480
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 34.65
  • Long. (^o): 135.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014634	Metagenome / Metatranscriptome	261	Y
F022612	Metagenome / Metatranscriptome	213	Y
F048731	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116188_10708191	F022612	N/A	GGRRMRDLSIGKYTRIRKDVARRLFKEGRIIYLTPSNVAASDSNMWIKPYPIDNQAGYDFDDIVNNFEYYNCCYELGYYTNFWINEEEE*
Ga0116188_10708192	F048731	N/A	LLPQQQKSEGGIDVIKKALRYALTISEDPKEIKKHVEEYMAAAGFDRRYKFKWCAFSGNHRFTFSGIFEYAGQRYYFNRLNGLHLEKI*
Ga0116188_10708193	F014634	AGGAGG	MKEKIKEIFDLERIREYAEANINLTEWIEEERGEKRKILLIATLVEGGHGAYIPGMVLELFGQAEGYDLENPYNFEKNETIHDALISLEIEVNECLNQLLPSKGWYYMGYHEADGSYCLFYEEVEQV*