NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123329_1243150

Scaffold Ga0123329_1243150


Overview

Basic Information
Taxon OID3300009656 Open in IMG/M
Scaffold IDGa0123329_1243150 Open in IMG/M
Source Dataset NameAnaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C12 SIP DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)637
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location NameWashington, USA
CoordinatesLat. (o)47.6525Long. (o)-122.3049Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089856Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0123329_12431501F089856N/AMLLSAGCASLGGSRNATVSIPCTYRFKMLTRPADQDRVDNAIRAVAVGPVTKSGTVSYPEYRFRVARLSDLDRLHPQLLFDNPDALLTANRRQVLNMRAAGVDVTFDSTDVSASATITVTFNVKPGSRLYYKHPGGVETDITAKVDKRGKVTFPASIKEGQKFIYARAVKDNVTRYIRINIFSNEVRDIRRNEY*

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