NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123330_1073420

Scaffold Ga0123330_1073420


Overview

Basic Information
Taxon OID3300009652 Open in IMG/M
Scaffold IDGa0123330_1073420 Open in IMG/M
Source Dataset NameAnaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_A C13 SIP DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1392
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location NameWashington, USA
CoordinatesLat. (o)47.6525Long. (o)-122.3049Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080199Metagenome / Metatranscriptome115N
F103498Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0123330_10734202F103498N/AMKKMDSIESCELQHCRLRTDILCEVQRREEKQDERFLALIDELRLDWKETKKEVISIKDTMIQGFIALIVAVIGVYVSYLLLNVNGFF*
Ga0123330_10734204F080199GGAGMKIMVQGVEETNLKLSQILAAVQENVDNTLDLFSGDMTKEIKDSAPYDTGRYMSSWFYERKEALKYAIISQNSYVPYNTVLVFGTEKFKPIANEPRYKYPDSERGIIHDVRQI

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