NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105855_1013006

Scaffold Ga0105855_1013006


Overview

Basic Information
Taxon OID3300009649 Open in IMG/M
Scaffold IDGa0105855_1013006 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2486
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameArctic
CoordinatesLat. (o)68.6137Long. (o)-149.3144Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020050Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0105855_10130063F020050GGAGVHASLVPADLTPQQVEALRQLANLGSSDAARSLGRLLGTQVEAVQSRAQVAPRGAVERVLPPDSSAFSVRFTIDGGARMRWVMHLTEEGAALMGGLLLGAPLLGEAPDGRMYDSALAEMSNIVVSSYVGGVAAAVGLTLVPSIPYVGKGTLSQTLEDAFGDLDSSLLLVTDLRLPGVRHAGRIIAAPVDDSISRLLSMLGAA*

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