NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116175_1107160

Scaffold Ga0116175_1107160


Overview

Basic Information
Taxon OID3300009648 Open in IMG/M
Scaffold IDGa0116175_1107160 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC125_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)974
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)37.78Long. (o)-122.42Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031844Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0116175_11071602F031844N/ALNNYSLYVEVLEYNDDTYVGSASVQLNVYPRIYNSFLPKISAYYFYYYNTSDFDTFSKIDGITWYNDSYTAFTDNVTINSSLKNIYKKVGTVYEKLIRIHHKQVCEPLWKIQYLNLHTGYYDRFSGWYLKQDTKQVARQTYNRLVVGDTGMRQSLINLDDEFTLISYDLPVDQANYIAKSIIMSPKTYLIDMNGTQVECVVQDSSYQDAVSVVNTFSNIKLKIKI*
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