NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116175_1020193

Scaffold Ga0116175_1020193


Overview

Basic Information
Taxon OID3300009648 Open in IMG/M
Scaffold IDGa0116175_1020193 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC125_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2768
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)37.78Long. (o)-122.42Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014002Metagenome / Metatranscriptome266Y
F016798Metagenome / Metatranscriptome244Y
F027161Metagenome / Metatranscriptome195Y
F030054Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0116175_10201932F014002N/AMEFNFNISELVSIIALLIAIIGGYVNTKIQLTKLVEANKNLSEKITNLDKKVSEICKKVDRIKIILAREGLNGNE*
Ga0116175_10201933F027161GGAGGMEMNNYIRLILDNLDITYVCSVMLIGYMFTKSSLLAKIKIKKRWLIAIIGVLVAIFYYFVLKVRLDILFFSFITAEFLNLYVAEYIIDYFIKKIKKLTEKS*
Ga0116175_10201935F030054N/AMSNREKWFLLIICLLLLVIMFSGECFRKKNKLIEENKILISDYKQRIDSNNLMIDSLKNELKSAKNVDTIIKIKYKQKIDSVYVYNYNDYVVFYDTLLNTNLANVDTFICFDSISVQKLTIKLINCKLDSELLANCLIQNNLYTNIINIQDSVILLQDSINTTLQENFDKKQKKLKKQRNTAIGVAFIEFLILIGVLAK*
Ga0116175_10201936F016798N/AMKKFILILVLLVLVSCEKEFKQLQRSDIIYNFIALNDDLDYKLVYFCDKYDAFEHFYDIKYTIYNEIGEHNYYKDMQARMTVVSHTKDTGTCQFQNQTFYYLAEKYNIKNANILSESQQIAVMVLAFKDGKQNYWNGYKKYKKSIE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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