NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116175_1015673

Scaffold Ga0116175_1015673


Overview

Basic Information
Taxon OID3300009648 Open in IMG/M
Scaffold IDGa0116175_1015673 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC125_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3259
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)37.78Long. (o)-122.42Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013091Metagenome / Metatranscriptome274Y
F031881Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0116175_10156732F031881N/AMNSYQFTINKKLSTVRVGENKFKFAIDKSGATTINITQDKIEDVIYSVFDNSEYLDLVRIITNIKGTQQVPKIFLQGANGVGNGLVDSQGCGFVDTTDLVLIDVPISVTKKRMGMELCLDDLVNTTLEVHISNGARNESLDIEDALLAYFTQVLRKNIQNYVFADSADGILNKILTSGTAVTPTASSDLGKLYDLFEALPADWKNSTEANPIIFISPNLMTGVRSEIITSSAPITSSIEVVNNRFNLPLTNAVVVATPYLTGTSAVAGIQNYLFLGTDLESDFEDTRIWYSNDNETIRFSSQLYLGTAVADITDFATYVKTVTP*
Ga0116175_10156733F013091N/AMICKLTNGISLKDCDTPGGVFESYFINVEDVDTLTVTDFQVSDLTLKTDAKAYKIAFEPETSNFSSNAVGSQENSSAAFEQACEIKINKVDNNVLKQIDALTKGRHLVIIKKADGTYEMYFHEGGAKFFANYTTGTALEDASGVTLTATHRQPSNMLIVSATVIATLAIAEETEPVTP*
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