Basic Information | |
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Taxon OID | 3300009648 Open in IMG/M |
Scaffold ID | Ga0116175_1006866 Open in IMG/M |
Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC125_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5593 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin028 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA | |||||||
Coordinates | Lat. (o) | 37.78 | Long. (o) | -122.42 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F022893 | Metagenome / Metatranscriptome | 212 | N |
F023320 | Metagenome / Metatranscriptome | 210 | N |
F067650 | Metagenome / Metatranscriptome | 125 | N |
F079954 | Metagenome / Metatranscriptome | 115 | N |
F087074 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0116175_10068661 | F067650 | N/A | MNITIRFVFKRRIDTPPQGSLPFGFTQLRLVDETFEVLDDNFSVNIDNENINDFSKAIDSKFTKTLKIAGTQKAIDFFKEYYEVRYEGESDYNFLFNSRTGEHCMIYVDGIEVMRGVALLTGITKKNNIVIFELQVINDVKDILNEFKNLYIDELGEFNYTWNFTNVRNLLHTIIDGTFTGICMSDGVCVSQKFISSENAVRTAIDMSKIPIAGNVKKLMDKAFEKIGVEYQSNFFSNSQIFGDLWLCNNKEENLGIWGDEDKMLLD |
Ga0116175_10068662 | F087074 | GAG | MIQGVYVYRKGGEVIGTPLPAFDDLFLQIESDNTAAGLYFIVDFLNEDSSKKVTIKLYPKIGYNEVETYISQILRNLFDKNFYFFNLNIKVKEYDENGYVSDFFMQFVVIPSIYNSFLPPLKNYYFYYYNGADYDILTKTGLKLYNYYTQDELDDSVTIDTNLKKIEKYNGEVITLTHKQVCEPLLKLKYLNLHTGYYDTFGGWYIKQDTVNIEKQIYNRQKLGDMGTRQALPELTDEFTLISYDLPVDQANYIAKNIIMSPKTYLIDTNENEVECVVMNKTHTDALSVVNVFANINLNIKL* |
Ga0116175_10068663 | F023320 | GAG | MKQYKALTFEVDLSGLGKEQWIQAELDYDEIAQKLIDTLIDVMREKDVEASSNLIQSLEPESKQGEIVIYADYYWKFIDKGVNGLRQSRDSEFSFKFVPASKKHALSIAKWLEFRGLATEFTTLADAYRVATATKIKGIRGRKFVEEFEKELDKIEIL* |
Ga0116175_10068665 | F022893 | GAGG | MKLKKAKKLTISYKVKVKHFEDFLLLCSYDKTDVDGFINLLSKCTEVDKEIFYNLRFADLIRFVDELVDSVDKEMYKAPKKAIKINDRYYKLIDLLNLQVAFYVDFDLVEKTPSYLLALCYTETGSYTDDRNSSVDEREKIMQNADIIDYMRLANFFLTWRDFLKRLKEIAKK* |
Ga0116175_10068668 | F079954 | N/A | MNKERWTKQKILKTCLELIPKINASTLNAFLIRVEKDGKYFSKMTFYKKIRPDSKEYKQIIEAIEDNNIYLGEYGLGKLKKLVDDYNLKAIEDWLRIYGSDKVKQALSRNYNITAKADISFEQEMKKVEEDLSKFSKEELLQYRALRKKLLNNE* |
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