Scaffold Ga0116175_1006866

Overview

Basic Information

• Taxon OID: 3300009648
• Scaffold ID: Ga0116175_1006866
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC125_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5593
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin028 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 37.78
  • Long. (^o): -122.42

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022893	Metagenome / Metatranscriptome	212	N
F023320	Metagenome / Metatranscriptome	210	N
F067650	Metagenome / Metatranscriptome	125	N
F079954	Metagenome / Metatranscriptome	115	N
F087074	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116175_10068661	F067650	N/A	MNITIRFVFKRRIDTPPQGSLPFGFTQLRLVDETFEVLDDNFSVNIDNENINDFSKAIDSKFTKTLKIAGTQKAIDFFKEYYEVRYEGESDYNFLFNSRTGEHCMIYVDGIEVMRGVALLTGITKKNNIVIFELQVINDVKDILNEFKNLYIDELGEFNYTWNFTNVRNLLHTIIDGTFTGICMSDGVCVSQKFISSENAVRTAIDMSKIPIAGNVKKLMDKAFEKIGVEYQSNFFSNSQIFGDLWLCNNKEENLGIWGDEDKMLLD
Ga0116175_10068662	F087074	GAG	MIQGVYVYRKGGEVIGTPLPAFDDLFLQIESDNTAAGLYFIVDFLNEDSSKKVTIKLYPKIGYNEVETYISQILRNLFDKNFYFFNLNIKVKEYDENGYVSDFFMQFVVIPSIYNSFLPPLKNYYFYYYNGADYDILTKTGLKLYNYYTQDELDDSVTIDTNLKKIEKYNGEVITLTHKQVCEPLLKLKYLNLHTGYYDTFGGWYIKQDTVNIEKQIYNRQKLGDMGTRQALPELTDEFTLISYDLPVDQANYIAKNIIMSPKTYLIDTNENEVECVVMNKTHTDALSVVNVFANINLNIKL*
Ga0116175_10068663	F023320	GAG	MKQYKALTFEVDLSGLGKEQWIQAELDYDEIAQKLIDTLIDVMREKDVEASSNLIQSLEPESKQGEIVIYADYYWKFIDKGVNGLRQSRDSEFSFKFVPASKKHALSIAKWLEFRGLATEFTTLADAYRVATATKIKGIRGRKFVEEFEKELDKIEIL*
Ga0116175_10068665	F022893	GAGG	MKLKKAKKLTISYKVKVKHFEDFLLLCSYDKTDVDGFINLLSKCTEVDKEIFYNLRFADLIRFVDELVDSVDKEMYKAPKKAIKINDRYYKLIDLLNLQVAFYVDFDLVEKTPSYLLALCYTETGSYTDDRNSSVDEREKIMQNADIIDYMRLANFFLTWRDFLKRLKEIAKK*
Ga0116175_10068668	F079954	N/A	MNKERWTKQKILKTCLELIPKINASTLNAFLIRVEKDGKYFSKMTFYKKIRPDSKEYKQIIEAIEDNNIYLGEYGLGKLKKLVDDYNLKAIEDWLRIYGSDKVKQALSRNYNITAKADISFEQEMKKVEEDLSKFSKEELLQYRALRKKLLNNE*