NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116110_1024886

Scaffold Ga0116110_1024886


Overview

Basic Information
Taxon OID3300009643 Open in IMG/M
Scaffold IDGa0116110_1024886 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2285
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040983Metagenome160N
F044277Metagenome154N
F053011Metagenome141N

Sequences

Protein IDFamilyRBSSequence
Ga0116110_10248861F053011AGGAGMSAITRPSSILPPLRSSKPAADINGFFQIVGQALVEFIKTEGAPEGTVPVYVETFPKERLSEPDTAFDVILFHVVSGEMAPTSNDGATVPRSPMLRNVARIPSQAGYNLAQYGWWENYTVEFEVWSKSNSVANSLAVWFHRFLIRYAYYYKFFVAFGVQQFKFAGRQEDKSDEKENQELQIRRLRYSFRLEFLDTFTERQLTDLTLNFKIKRDVQTVELDTAQQHNAEYER
Ga0116110_10248862F040983GGAGVDFYRDISATIDLREELHSVIHGSEEIVGQGRTVILRRMTNTSCPGCWDTKTGGSIRPNCRYCQGEGWQFYETQEIMALYRGVAPVYKPGVLATGEYPQNAMGYTDQNRCTAYVEVFRNDGSQVYPDYERYTLQTAKAYDKLYETKVDPEGNAITDSSGRFTRTVKWKVLSVVPTFGDNGRIEFFELGLEKENV*
Ga0116110_10248863F044277GAGMQNLIFHISLPKGIKLMNGATLMKDVTFDFISQITPYYSTIDMVRLAAGPTLKKLSDITIACQIYRSSNEADLITAARVPLSGLQHTRLIGSRLQYVTALASRDLMLNVVSLLGPGAHVLANFSVDRKADNKQRLAEFEESLKLYEVVLRSGGRVMPGGRPDFHFAAKGVLDWAERTPARTWFANGMGANASSMDPGSPTGGRGKPIKFFASPTCSPPMSSMRIGVYQPGFPVSLFYPYAMGQ*
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