Scaffold Ga0116120_1013753

Overview

Basic Information

• Taxon OID: 3300009641
• Scaffold ID: Ga0116120_1013753
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3127
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y
F046782	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116120_10137531	F046782	GAGG	MMNPLANLALSVGQTLLHEAGRLLFGIALGRAKELLRTPQQLGTRQLALNRALQKKAVDGALLAGPRTGKEYAKFTLKKGLPTDQRPRTMAVENEPHSVDDFNGVIKEGYGKGEKRLIYSGTGVIK
Ga0116120_10137536	F025427	N/A	MEELLVSLETCPIQKKGLFWRLLKLYWKKLLFIALMLVLPGGLIVLFLCVTAWALNWEHEMTAYMDETYKKWKEEHDIHAE*
Ga0116120_10137537	F027079	N/A	GFKEERRETLVIKAFLNLCLILFLDTLAYMVAIVAAAAVAWAAFWGARWVLATLQNAVTALKAHQRKKEMHAHATR*