Basic Information | |
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Taxon OID | 3300009641 Open in IMG/M |
Scaffold ID | Ga0116120_1013753 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3127 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | 1.5 to 1.75 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F025427 | Metagenome / Metatranscriptome | 201 | Y |
F027079 | Metagenome / Metatranscriptome | 195 | Y |
F046782 | Metagenome | 150 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0116120_10137531 | F046782 | GAGG | MMNPLANLALSVGQTLLHEAGRLLFGIALGRAKELLRTPQQLGTRQLALNRALQKKAVDGALLAGPRTGKEYAKFTLKKGLPTDQRPRTMAVENEPHSVDDFNGVIKEGYGKGEKRLIYSGTGVIK |
Ga0116120_10137536 | F025427 | N/A | MEELLVSLETCPIQKKGLFWRLLKLYWKKLLFIALMLVLPGGLIVLFLCVTAWALNWEHEMTAYMDETYKKWKEEHDIHAE* |
Ga0116120_10137537 | F027079 | N/A | GFKEERRETLVIKAFLNLCLILFLDTLAYMVAIVAAAAVAWAAFWGARWVLATLQNAVTALKAHQRKKEMHAHATR* |
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