Scaffold Ga0116126_1056200

Overview

Basic Information

• Taxon OID: 3300009640
• Scaffold ID: Ga0116126_1056200
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1522
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003000	Metagenome / Metatranscriptome	514	Y
F033709	Metagenome / Metatranscriptome	176	Y
F083628	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116126_10562001	F033709	N/A	KHTFLFKYRDGKVLLDDDKPEQIQAQPSSESCAETDIAAECAIPAATVDEAVEFLPSTFSDEDASDVPWVM*
Ga0116126_10562003	F003000	N/A	MKANAQLGEMHDRLIDFHLRDRKERIGDVLLMWVEDPLKPRDEHGRLRVNPILLLLAIVFAVVFGIFLVFSMVQS*
Ga0116126_10562004	F083628	N/A	MTAENEYRLGRRAFHQNQEESVAVTIAIVAVFLLAGGSYILVSRFHVRSVQLVEGSLYAFFAL