Scaffold Ga0116126_1023667

Overview

Basic Information

• Taxon OID: 3300009640
• Scaffold ID: Ga0116126_1023667
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2671
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031336	Metagenome	182	N
F039920	Metagenome	162	N
F044872	Metagenome	153	N
F062380	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116126_10236671	F062380	GAGG	MPSDFNDFGDFEELLFADPGSRGACKLIIAYHPAFPLALGRIECASGLPIDIQVNVLESTPLLHTAELVFTGKTTDLCELQMRLTQWTAQFPNLPPMPEEAL
Ga0116126_10236672	F044872	GGAGG	MNTGLLNTFASMVKGNLIIVDAIKAALSKFEGQPPSDDQVLVAISETLFTVALNKDARQTVSCYLIQLYANHLFISDPTSEFDTCMRLARREIDELLSFTVLDRIAKYVWGRRDQFLDLWTRFAEDMEAYPQSTTHILQRVVVDTVQLLEAA*
Ga0116126_10236673	F039920	GGAG	MIDVQALDRTGRRQVLHGLLAQYNLGSESAKVALGMAHQNLPGFTALMERNVRLMRPGAAMEKTLQAVLARPAKPKFRRVAPEVSHSSVRFVGLDKLKF*
Ga0116126_10236675	F031336	AGGAG	VLNGDVIILNPPRDPSWFSDASQSVSLFFWEHSDLIPLLMAEVALAVLIFAGFFWWERRKSKQAVQVGELERMYSAEPIPWPR*