Scaffold Ga0116126

Basic Information
Taxon OID	3300009640 Open in IMG/M
Scaffold ID	Ga0116126_1000721 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009640 Open in IMG/M

Scaffold ID

Ga0116126_1000721 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22849
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (90.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

22849

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (90.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)	.4 to .5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

.4 to .5

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006635	Metagenome / Metatranscriptome	368	Y
F008704	Metagenome / Metatranscriptome	329	Y
F052336	Metagenome / Metatranscriptome	142	Y
F087101	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116126_100072116	F052336	AGGGGG	LTVRELIKKQRELVDSDSPMKRLAGALLIPAVLAERLAGLADRQVGQLLLDEVWPRLNPVGPESTICLHAADRLRGSPTERCPACPRCGSEMIRHIGIDEPDFLECALLGCGLRTQAT*
Ga0116126_100072117	F087101	GGA	MKQTKVHNQQQVPLRVKGEAVKYLSSLPQFHGIPDESLIQIAERRTGLNVPDRWVAVALIIGNRVPIPVPAPDGRPQGKPCEVTAPAKLVAIPGGRIAR*
Ga0116126_100072120	F008704	GGAGG	MDYLHVFVLTSLDLDKSGDVRSRNVAVTFDLFEAEDHRNKGVENDYDVFVVPCDWQEDAARSELISAMRGFRSIVKQMEDEALR*
Ga0116126_100072130	F006635	AGGA	VKVWALVSLLIFLAFGKPHADPPGEWRLTQDSEAIVPDAKLRGQIFRALDAAEKAGTSPTISHFKVRAATVVEIAGQEHVVLGGNTEYDLPEAIHGETSVLNHVTADYGADATRHAVRFIAFYGDYSGGAGSCGDCRDYQLASTDWEHLLVASGLSSDHTVKVTRFADQIVCERNFPEVKAEKIALPPGVLEKIVKSAQEARLGGVTLFTTVRHTGAAGLAYSGKIYRAAGGDDAAFHYRYPIGGLLQQAETERDYFLRAILVSGEQGQWPVISYRDRQYGYEASSFNHEAGKPPIQLILTNGQGEYRMTTFEACLPRAFSTVDFRPEAVKEFIRTHRGDR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116126_1000721

Overview

Ecosystem & Geography

Associated Families

Sequences