Scaffold Ga0116113_1013161

Overview

Basic Information

• Taxon OID: 3300009638
• Scaffold ID: Ga0116113_1013161
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1771
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F042119	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116113_10131612	F003764	GAG	MQIQLDSPYAHDENPAALVAGAEIEAAGLHRCLKIVRLWSQSNAVPRLRREEIIEEEQRIASLYAAILFEIGSAFGLRAADELRVRIEAACILDPRECPPAEQGFLFPIPRDSANAASPARARK*
Ga0116113_10131613	F042119	GAG	METIREVNPARLAWGTYDHEKNDYVSEGDIPASYSGDSIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRTFNGTPTNCRDKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVQFVARQHEDVSVPQVQLALF*
Ga0116113_10131614	F003942	GGAG	MLGHRLNPTIHRYEDVELIEVHSEYLECRFMVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEIQRQAGHTIYAENLSAMLYGTGPNPARS*