Scaffold Ga0116117_1000098

Overview

Basic Information

• Taxon OID: 3300009635
• Scaffold ID: Ga0116117_1000098
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32185
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (69.23%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000109	Metagenome / Metatranscriptome	2202	Y
F004581	Metagenome	432	Y
F004832	Metagenome / Metatranscriptome	421	Y
F007956	Metagenome / Metatranscriptome	341	N
F010440	Metagenome	303	Y
F012741	Metagenome	277	Y
F069592	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116117_10000981	F007956	N/A	MAKTMLASKINCLNSEYPRNSFSLKNPDVAKEFLATAFYHNAATAKGLTAFDKDVFAASKKAALREFSVLAASVETGGSATKEFNNTFALSIERPPIGAPSQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRAARTKTTQELER*
Ga0116117_100009819	F010440	AGG	MTVAEAEEKLETLTRNLATSEISLSQRQRYEIQAARCHRFIQRARQKAHRSLASFAETLLGMAADTVFDQNQNAALITAAHLIRCASIEQLAIAVPAAIRETPTDSTRPAGFKCREFTETAECLLGMDNSTFSCECNVAIRTALQLGNIVGLHQIHQSVRRAQADSSELGPKGIVNRLTEICSAYHPKKPASTPRLPDSQNATSLNTAPVSEGHL*
Ga0116117_10000982	F004581	N/A	MARHIELSMTPQHQQKHGGPDPISTNDITLATTLMNSVYGYPAGKQSVLALSAGLLPGEERSQTVRGLFRMTAACSEYDQTLTYTLLPLPGREIETANLLKTTAAYSIERAGAHSRQIPPSTRHPVQLER*
Ga0116117_100009820	F000109	N/A	MLYNTSQKGGGMTTPKKAAIQTKRRVVAPAEKRTQIRLTVDSKFTKTHFTQLFAVLKIRNKNALAEHIIMNFKTKAAQAQLVGFYNGPWLNIPFQTIDTAFVFPLTHEIADELERVGGEILGGVNRSKTFRVMVAYFASVHKLKTPTQTFA*
Ga0116117_100009825	F004832	AGGAG	MQIVYRNIRFSAKVDRCLRRRWRMHGDLSIRVREALDGVNLHDVELLEVDSRRVHATQVGVFESAWLAAHEAARVRGCSLNTLVNSAVWAAFGQQRSSLRGRPRGRNIGGASVAEVCLDQA*
Ga0116117_10000987	F012741	N/A	MKEESMFTPQSKNLLGVLSLTNSAGGIFQSLKRQTAAAGFTAYCGIISVALGLWMWLWRDTTLQDKTLTRTVGAALVLSSFFFYQHLRRGFGAFFLILTSTGIGIAVHYSNHPMINGDRPEILAIALIAIGLIAYFVQTRYLPGFLFLLASSVTIIGILWSYPAIFCPIVMVITGGVLIFLGILIRSLAMFNSFM*
Ga0116117_10000988	F069592	AGG	VNDKYTDHAVLSPLFAQNLVQRLEQLNIVDQFTDASNLALPFAPFQLFQISFSVASSNELPALLGGRSLPRSSRAASSATHPSGKETPQRPHSD*