Scaffold Ga0116129_1001625

Overview

Basic Information

• Taxon OID: 3300009633
• Scaffold ID: Ga0116129_1001625
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12235
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000214	Metagenome / Metatranscriptome	1570	Y
F002165	Metagenome / Metatranscriptome	588	Y
F003631	Metagenome / Metatranscriptome	476	Y
F033517	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116129_100162511	F033517	N/A	KAVAENGRATEIGYQRFPLKRGTIAMALPFGETLPYGGYVIYVNVVGEVARRNAIYRQRLQTPGALQVLVGP*
Ga0116129_10016254	F000214	AGG	MKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEVNSDMAKPTLATAVNGPQQPIRIPAAPVVAAAQPVRAAGWDDTAKRWP*
Ga0116129_10016255	F002165	GGAG	MPQEPDPTVETLARHALDLERLKDALGLLGVNPCACCQKFVRRSDTGAMFDAGELVCYGCIPDWWQQRRLQLNPKDRENLEGKLVFWLRDYHHAELFKDPAKLPESSQQELHIIANCLECRGTGKSLGQDHCRYCEDRGTVWVIVSRKKT*
Ga0116129_10016259	F003631	N/A	MGLELLLNLAWMLLLLPACWLWRRGAGARMEHRVTALQCLLALGCVVVLLFPVISATDDLHAMRAEMEESTSSKRTVRQAASEKHSGWINRLQGPPALAASAMPLPTPEAGLLKICVASLTSFSRPSGLHAGRAPPSSLLG*