Scaffold Ga0116114_1002051

Overview

Basic Information

• Taxon OID: 3300009630
• Scaffold ID: Ga0116114_1002051
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9500
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000451	Metagenome / Metatranscriptome	1124	Y
F002261	Metagenome / Metatranscriptome	577	Y
F021908	Metagenome / Metatranscriptome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116114_100205110	F002261	GGA	MPNWPSIEAFVDGVISQTFGEPVVYQPVQAGAAQGSAFTLTAVRHLRVREESGAMANFEEISVNSSDFSNPPAKGDWVTAWGAQYVVTTVRQPDAYGMLNLALLQRAS*
Ga0116114_10020513	F000451	N/A	MARLQTVIKRARFVYSPYTATEMQGFAQVFADSIRARIQSGRNIYDQAAAPLKPGLSGRRGYPDYKAARGLQPIRDWTWSGHTLRCLKVLTANENRAVIGFLDEALPGRRMTAAQIAAFNNRREAQWGVSPRDRQAVLAAFLARRVVMLKAA*
Ga0116114_10020515	F021908	N/A	LDGCPACGADWKTIDVSHGPGCPKNLLEEAMDTPNGGLVRRCFRILNAKSIGLTITLADITEEELLVLELIEAGRQEQFRCADTGAQGSR*