Scaffold Ga0116114_1000219

Overview

Basic Information

• Taxon OID: 3300009630
• Scaffold ID: Ga0116114_1000219
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40935
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (55.10%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002261	Metagenome / Metatranscriptome	577	Y
F003186	Metagenome / Metatranscriptome	502	N
F020297	Metagenome / Metatranscriptome	224	Y
F021908	Metagenome / Metatranscriptome	216	Y
F023143	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116114_10002192	F021908	N/A	LDGCPACRADWKAIDVSHGPGCPQNLLEEAMDTPNGALVRRCFRILNAKSIGLTITLADITEEEFRVLELIEAERQEQLKNGYGGAQDRR*
Ga0116114_100021925	F020297	AGG	VQTRKEKTMNFLQILQTILSVAPSGIQLTQEVVALVQAIEAAFTAGQTPASHQQAVASALGAHLAKQ*
Ga0116114_10002195	F023143	AGGAG	MDWIFMQSPEGEVKEVEATAAALTPLMVAGWRQVPAPAATGPKPATPVEEKK*
Ga0116114_10002196	F003186	N/A	VINPKTILGEWVTALQSCPDLVTAIGGNGSNIRAFMEGLATDNNLRLAILQMPPGSVLVAWNGTTPRRLTGGSLHFAHRFSIYLRAPEQDSTATYADLFWLLVSAVPTGAPSWESLLHFQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE*
Ga0116114_10002197	F002261	GGA	MPNWPNIEALVDGVVLQTFGEPVVYQPVQAGAAQGSPFTVTAVRHLRVREESGAMANFEEISVNPSDFSNPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLALLQRS*