NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116119_1175627

Scaffold Ga0116119_1175627


Overview

Basic Information
Taxon OID3300009629 Open in IMG/M
Scaffold IDGa0116119_1175627 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)534
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1 to 1.25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044335Metagenome / Metatranscriptome154Y
F055869Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0116119_11756271F044335AGGAGMPDLGKSRRKLKIAIAAMLAADVVAVAILFSPLVGSVESRRLQILELRAELTKKNREVAPLRGMDKKIVLAKDQISGFYKDRFAARDSDLINEL
Ga0116119_11756272F055869N/AMPSSLHVVSLRPELNDQNQMELEMRVVCQTRSAAVELVHRMEGSRHFRGAQLVAEAQTGEAGAGVSALVIAVYIPDSTDRSGR*

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