NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116119_1014533

Scaffold Ga0116119_1014533


Overview

Basic Information
Taxon OID3300009629 Open in IMG/M
Scaffold IDGa0116119_1014533 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2261
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1 to 1.25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019342Metagenome / Metatranscriptome230Y

Sequences

Protein IDFamilyRBSSequence
Ga0116119_10145331F019342N/AEDLERVPALLEAVMYKRFIMLLGVFLGSYVPTGAQTPFPRIVPAQVRVAPIVMVRTVPAPFLFPSFPLSESPGKSVAHFSYLFVGAYERDQSLESLSPMREAKTLFLTQSSLPLVQLWGGRLRLDGFKSALNMQNVQLGPSAAGGLLDYRPQRQGYPGGPRSFGLCGVNLSFHFGRDLRTRPPTQVVRRMTRFVGTVLN*

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