Scaffold Ga0116105_1000019

Overview

Basic Information

• Taxon OID: 3300009624
• Scaffold ID: Ga0116105_1000019
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64059
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (64.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000522	Metagenome / Metatranscriptome	1055	Y
F034635	Metagenome / Metatranscriptome	174	Y
F071739	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116105_100001919	F071739	GGAG	MGIAAFRKMASCVLLLGFPASLFAADSNAAMLYTHGAAWLNGSHVPSSSAIFVGDLLQTRSDSGANINALGSSIVVLGDSLVQFEGSALKVEHGGVEVATSKGVATQAGEVRVAPVSNAWTEFNVTDVDGTVRIAARKGDLTVTDGKGTVLLAQGQQTTRDEQSDQAGSPDKADKKNNKKRGEGAAPAANGGALNSTIAIGVGAAAIGGVAIWVLTRSENPVSPSNPN*
Ga0116105_100001932	F000522	GAGG	MDHHEAVRKFEHLMLKEADHAREVATELEALEPILTTENSRQLAQLQIKASHRLSKEFRELAEKVKEK*
Ga0116105_100001934	F034635	N/A	MKLTSVRLLIFALLLANGVAAQNADSDKITSDAFRDAPAPVGAVAVPTNHEKTKVIDKKFIAVMGALGGAESFRFTSRKLVLDHEYAAGAPWVSRVPANQHIVVKDSFLYSCEFLVAYELKKAHSWLPGDRFIRKFWWAYPAAMVPIHLKNAVGSVRTQGPGGCTSIECAEQQP*