Basic Information | |
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Taxon OID | 3300009624 Open in IMG/M |
Scaffold ID | Ga0116105_1000019 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 64059 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (64.91%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | .1 to .2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000522 | Metagenome / Metatranscriptome | 1055 | Y |
F034635 | Metagenome / Metatranscriptome | 174 | Y |
F071739 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0116105_100001919 | F071739 | GGAG | MGIAAFRKMASCVLLLGFPASLFAADSNAAMLYTHGAAWLNGSHVPSSSAIFVGDLLQTRSDSGANINALGSSIVVLGDSLVQFEGSALKVEHGGVEVATSKGVATQAGEVRVAPVSNAWTEFNVTDVDGTVRIAARKGDLTVTDGKGTVLLAQGQQTTRDEQSDQAGSPDKADKKNNKKRGEGAAPAANGGALNSTIAIGVGAAAIGGVAIWVLTRSENPVSPSNPN* |
Ga0116105_100001932 | F000522 | GAGG | MDHHEAVRKFEHLMLKEADHAREVATELEALEPILTTENSRQLAQLQIKASHRLSKEFRELAEKVKEK* |
Ga0116105_100001934 | F034635 | N/A | MKLTSVRLLIFALLLANGVAAQNADSDKITSDAFRDAPAPVGAVAVPTNHEKTKVIDKKFIAVMGALGGAESFRFTSRKLVLDHEYAAGAPWVSRVPANQHIVVKDSFLYSCEFLVAYELKKAHSWLPGDRFIRKFWWAYPAAMVPIHLKNAVGSVRTQGPGGCTSIECAEQQP* |
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