Scaffold Ga0116133_1001039

Overview

Basic Information

• Taxon OID: 3300009623
• Scaffold ID: Ga0116133_1001039
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8299
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004702	Metagenome / Metatranscriptome	427	Y
F019512	Metagenome / Metatranscriptome	229	Y
F045234	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116133_100103910	F004702	AGGAG	MNGTSMRNVLLVFVLAAATLAVGCGSGAEGKYRDPSGTINAEFKDGKAYVALGAYAVDGTYKVEGDKIVARGDFGPMLPSPLVFTINKDGTIDGPRNSMIPRLEKAK*
Ga0116133_10010394	F045234	GAG	MITGIMSTGGLTALAAKKSHAKANANERGSFDSRRLKDANIKSEMQEKEQR*
Ga0116133_10010399	F019512	AGGA	MHRATSLAALALLLWSVGCGHASSSSSADDEIPGLTKADREAQSAAMAELQRHWLKGPDGWTTAVVSGSPYAPDHFLRQCRALTIKEMEPQDLSDSDKLNGFEWVGRANFQPTSCREGGGQNTMILDGMSHVVVEKHSGAWSQWVDFTPGPLRFAREKGRWQFNWDATYLRGTLPGPQDFANAGVR*