NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105173_1039510

Scaffold Ga0105173_1039510


Overview

Basic Information
Taxon OID3300009622 Open in IMG/M
Scaffold IDGa0105173_1039510 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)771
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-24.9939Long. (o)-35.9974Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007647Metagenome / Metatranscriptome347Y
F018942Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0105173_10395101F018942N/AMELILAGVKITPEDVLKAVWKKILVWFWDLQYQNALAEKEGMLKRLAGIGSS*
Ga0105173_10395102F007647GAGGLDQVKVNEVVNEFFNSLKSEEDKMLETGLTNNATVEILHQAVVQLCQEHPKRFEQYVKFFEEGCMYLQDESDELPEVEKC*

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