Scaffold Ga0114912_1014185

Overview

Basic Information

• Taxon OID: 3300009620
• Scaffold ID: Ga0114912_1014185
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2374
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.47
  • Long. (^o): 11.53
  • Depth (m): 3514

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005783	Metagenome / Metatranscriptome	390	Y
F071307	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114912_10141852	F071307	GGAGG	MPTDNFKLLHQSQISTTAGALYTVPANHETIIKYITVVNNDTEALWFTLFHTTGTTYSEATTIIPEATLPIGGWAEFNGTITMDASDIIGGDAEQGSEITITIYGDEIDVS*
Ga0114912_10141854	F005783	AGG	MAKRYIVANPDGTIAIGQVIGPDPDGLKLTKILFEISRTTDRTVHFDPAVHTLEAIAAGISGHRALPLLGECEDTDLPADRYFRNAWEWGE*