Scaffold Ga0105236_1039076

Overview

Basic Information

• Taxon OID: 3300009619
• Scaffold ID: Ga0105236_1039076
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 606
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 9.7046
  • Long. (^o): -55.3027

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F009404	Metagenome / Metatranscriptome	318	Y
F060967	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105236_10390761	F060967	GGAG	MNKSRVARDLWRKVFNDNLINLSDGDARKQVVREFLNDPVNKKSGWKSKDARFFRLGFQTVAKENNFNVMNIGVT
Ga0105236_10390762	F009404	AGGAGG	MSSDEVEHISPRGESLVKHCPICGVEFDMVVLTNRWLKCDSCESVFMVKIKTGE*
Ga0105236_10390763	F005148	N/A	SKRISFLESKMKKAKWEENLKRTLPESEEVECKNCGLKFVDDFNLVCIGALDMCLLCANRNLDKETIKEVYHVE*