Scaffold Ga0105236_1003183

Overview

Basic Information

• Taxon OID: 3300009619
• Scaffold ID: Ga0105236_1003183
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1643
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 9.7046
  • Long. (^o): -55.3027

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052649	Metagenome	142	Y
F090487	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105236_10031832	F052649	AGGAGG	MTEFHVLYYNWERDYTAPPWFSRLTCSSGSLTVVYTSPSNSKEDNA*
Ga0105236_10031833	F090487	AGG	MLKVLVGKFVAKHGIVPLLLKVGNWAVKATKSKKDDEVWVKVKKVLEEV*