Scaffold Ga0116127

Basic Information
Taxon OID	3300009618 Open in IMG/M
Scaffold ID	Ga0116127_1011747 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009618 Open in IMG/M

Scaffold ID

Ga0116127_1011747 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3111
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3111

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)	1 to 1.25
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

1 to 1.25

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F037652	Metagenome / Metatranscriptome	167	N
F064316	Metagenome	128	N
F080330	Metagenome	115	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0116127_10117471	F064316	GGA	MLGNAQAEASLEVADPKAVKPARKVGALKMLLRQFEATGNPPLQGEEVLPTKLVGDGNYHWYPLAWLRWLAKWERLKTLVLVIILLGLLAGYGLIRQRRSCQVTLPEPSTEMLLKAKGFDAFNQSQAEAFILFVANAANQASCEGMPNLNLLEGSIDSAIYLRLQQKGMSQQLKNVLPSEFPIYTLYISEVTRWRYNPATRIVSACVKGFRLSHTLSGKSGMEPYRAQVEIFWEPMSNRNKWGYYVQRLDEFYGAAAKAYDAELKARDRAGA*
Ga0116127_10117472	F037652	N/A	MDPRPYTHFWSEEPEARRRAWRPTDEVRRRLMRLWVIQALLLAAIVLVAGALTRESKRVPPIFARLPNGVIFETTTGDLQMDRLARTELVNNVLQILYYQEGSFNYLATIRQNVKPQLVGRFRAEMQDASQQTNSTVYLNVVETFEALNVPAKGFDAVTKGVLSKRTSQESASAPIYIRTRWLLAGDRYLLSRVQ*
Ga0116127_10117473	F080330	AGGA	VKKTAPFLLLLLAAGTVLAGDPFAGRDASPSGLADGVRLSTRLVENVYLMPEQITKLIFPKAVEEVSVNTQVINIGRNPPDSKEYYLLLSPKVAQGDVDMHVVLEGKTYTFRLIVGREKVNYRKTYTAEGGGSGRSLRKVPPLAPTEINTTRLIHIINQSMRDPNYASVVAKDLGSSPQGATYLWDGAEVVLQSAWHYYPQDVVILQVEVHNPTSRAIYLSATQLEPYIANTAFHYLLTQQGAKVLLPGQTDIKYIFLQGYGIDLEGARFELRLPAAGTQLNAQPPQDP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116127_1011747

Overview

Ecosystem & Geography

Associated Families

Sequences