Scaffold Ga0116111_1038871

Overview

Basic Information

• Taxon OID: 3300009616
• Scaffold ID: Ga0116111_1038871
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1454
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidibrevibacterium → Acidibrevibacterium fodinaquatile (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1 to 1.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017431	Metagenome	240	Y
F041547	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116111_10388711	F017431	AGAAGG	MTKANTKSEQEFDRTEILRYLNECGLQPVTPKSILIYLDDCLRPVSLGGVEFHLRYMRDRGWVELGIEKKIGLPEVIRWTRITANGVDEYDRRCVALGEAK*
Ga0116111_10388712	F041547	GGA	MISANQIQAVLIGAGGFLATSMAGVGAYRLFSAVTRGFMRVPISLEKGADSLERVVLAVETQNAVSDQVMELKGLLMTTREEIMKMGNEREQIGRELRLMSRKIETFACFAQDG*