Scaffold Ga0116111_1030495

Overview

Basic Information

• Taxon OID: 3300009616
• Scaffold ID: Ga0116111_1030495
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1741
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1 to 1.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040445	Metagenome / Metatranscriptome	161	Y
F046785	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116111_10304953	F040445	AGGAG	MTVTLNLKPEVEAGLMARARASGMPLEQYLLSLVESAARPTAPNTAAAEQPARVEAVRRMVEFGEKHRLSLGQPITRKLLHEGHRF*
Ga0116111_10304955	F046785	N/A	MKMKKGSSAKSNEHRARKKLVYVKSPAEIPDFKSEDEIASWYHTHSTVLIQDQLATLPARVGGKLRARLAARRGNGNALPRGQSRTRSAQST*