Scaffold Ga0116111_1018570

Overview

Basic Information

• Taxon OID: 3300009616
• Scaffold ID: Ga0116111_1018570
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2503
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1 to 1.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025900	Metagenome	199	N
F050080	Metagenome	145	N
F062380	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116111_10185701	F062380	GAGG	MPGDVNDFGDFEELLFADPGSRGACKLIIAYHPAFPLALGRIECASGLPIDVRVNVLESTPTLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV*
Ga0116111_10185702	F050080	AGGAGG	MASSFVSRQRTLQRNTPPVAIKPFVRAAQNFALQTKQNREITDGSGQTMGTEVYTEIRMQGNVLAIRDEGIEDEFGRQYIGVVIQINPDKDRFVQTADPELHAQILKLNKGDLVYVTSEWHRNSSGRGFHARAKTITVLEPAPAPGPVAVEAATDELAAVA*
Ga0116111_10185704	F025900	AGCAG	LKSQLQENRVPVSRTRKPSKKKNNLAPSSKEARQKIRRWSFVVQVTKGDTVKTFQPPALTIGNMTSARAAADTILNDIASLDQFKDCKVVVNPKAEETVSLTMLNQINGLNEQSRLLTFALKRAVIDLVKQDTSCPCHQIEDEAARQVEFDRHVTELLGKYVMEEQQAMRRQQMIDAGIDPDQVLNNQLPAEQAPAEFQAAPAVEESPAEQVNTDPFPDGEFGKEVA*