Scaffold Ga0116111

Basic Information
Taxon OID	3300009616 Open in IMG/M
Scaffold ID	Ga0116111_1008538 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009616 Open in IMG/M

Scaffold ID

Ga0116111_1008538 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4453
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4453

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)	1 to 1.25
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

1 to 1.25

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F020887	Metagenome	221	Y
F025336	Metagenome	202	Y
F054526	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116111_10085384	F020887	GGAGG	MRTKITFYGEIAGNIWMPAVECTKAFHLELTRIPRTSSTRTYPGIAPRSMEITCLRDALLHLTNDGDFQSCSITWARLEVSHYFGDETDGTHTVKIRTRVWELRGRGQDADCFVEVRS*
Ga0116111_10085385	F054526	AGGA	MSNSQEHLSAPKLIEQVIGSGLFSLDDEPHFSWQGCEHCADGLGAEVYDLQGRRSLEDRESYDFRVCGDCINRLYYGTEEN*
Ga0116111_10085386	F013913	AGGAGG	VNLTPSTKGSFIAGVGLWCLIWAALFKADEIAEAGGLQRWVSSDRCLRWIRQHKSTSLISTEILNYSHTGLDPLGVTFALGGTLVNVLVIYFLLPILDRAKRGGKALNLQF*
Ga0116111_10085387	F025336	GGAGG	MALIALIAAAEAMLYSASRSKRGQTRRQQVLMGNSLDSARVLPLVDTYLKRKTAGASRVQTFVASKLAEVCRRVVHTRSFEYLLLHVIRTADFKCRSKFLNKQRRVTL*
Ga0116111_10085388	F014639	AGGAG	MSEITQSTNTPASSETGFLNRKWKSIRFFFAKRAFESKLGSILTAAAGHEGNSLPVGNSQYQLLSAEADSLCTEFSDRWGLDVDLLRARIPGLTKLAGLSVPPPTKDYARLACLGMVAVPLALFLIGAMAGLVSAGFHLVGGR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116111_1008538

Overview

Ecosystem & Geography

Associated Families

Sequences