Scaffold Ga0116111_1004294

Overview

Basic Information

• Taxon OID: 3300009616
• Scaffold ID: Ga0116111_1004294
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7424
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1 to 1.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006757	Metagenome / Metatranscriptome	365	Y
F013103	Metagenome / Metatranscriptome	274	Y
F050089	Metagenome	145	Y
F073812	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116111_10042941	F013103	N/A	KGTKAVISVHFSAYGQRTFNNLRANFVGEIPRKEFFNTHRR*
Ga0116111_10042943	F050089	GGCGG	MARQVFVFDAPPGREMCDFCSASPTARLYACRNFVVPRTKHAVFQHESIGAWAACDRCAVLIDAGHWSQLTDRAFRRFCKKHGVSRYEEFEVREQLREIHQFFKENLIKEA*
Ga0116111_10042944	F073812	GGAG	MADPRQELESALSPLAWILNFIWDTFRLMFWFFMSPILIIAWCFHHPVEARLYIVSAIPLLWNGNWGTRGLLIFFVLLIASLFGKTMHKICWGIVRLALVAGLIWYIYMIFKLA*
Ga0116111_10042945	F006757	N/A	MRDLAVLPPIKTTLRVALLSLSAYKEIPTEQLIEAARALPGGTKVHCPDRLTAIVLLLGTRLVELN*